Top e-Invoice Software in Malaysia
Explore the top e-invoice software solutions in Malaysia designed for businesses. This guide compares the best tools for automating invoicing processes, ensuring compliance with Malaysian regulations, and streamlining your business operations. Learn about key features, pricing, and benefits to make an informed decision for your company’s invoicing needs.
Introduction
With Lembaga Hasil Dalam Negeri Malaysia (LHDN)’s nationwide e‑invoicing mandate rolling out in phases, Malaysian businesses must find the right e-invoicing software in Malaysia to stay compliant. This isn’t just about meeting legal requirements—it’s a strategic opportunity to upgrade your financial processes.
If you’re searching for the best LHDN compliant software in Malaysia, this guide cuts through the noise. We’ve curated the top e-invoicing solutions in Malaysia for 2025 to help you choose a system that fits your business needs.
Why E‑Invoicing is Essential
E-invoicing in Malaysia is a government-mandated digital system for creating, validating, and submitting invoices electronically to the Inland Revenue Board of Malaysia (IRBM) via the MyInvois Portal. It ensures accurate tax reporting and compliance for B2B, B2C, and B2G transactions.
Adopting a dedicated e-invoice solution does more than just keep you compliant; it automates your invoicing process, reduces manual errors, and improves cash flow.
Implementation Timeline
| PHASE | ANNUAL REVENUE THRESHOLD | DEADLINE |
|---|---|---|
| Phase 1 | Exceeding RM 100 million | August 1, 2024 |
| Phase 2 | Exceeding RM 25 million | January 1, 2025 |
| Phase 3 | Exceeding RM 5 million | July 1, 2025 (Upcoming) |
| Phase 4 | Exceeding RM 1 million | January 1, 2026 |
| Phase 5 | All remaining businesses | July 1, 2026 |
To understand more about how e-invoicing works in Malaysia and how to stay compliant with LHDN, check out our comprehensive e-invoicing guide for Malaysia.
Key Features to Look For
- Direct MyInvois Integration
Must connect seamlessly with LHDN’s system via API for real-time validation and submission.
- Technical Standards
Generates invoices in the required format with all mandatory LHDN fields.
- Robust Security
Prioritizes data security with features like digital certificates for sensitive financial data.
- ERP Integration
Smoothly integrates with existing POS or Accounting software to avoid double entry.
Why AutoCount is the Best E-Invoice Software in Malaysia
- LHDN Compliance
It integrates seamlessly with LHDN’s MyInvois portal, ensuring real-time validation and submission of invoices, keeping businesses fully compliant with Malaysian tax regulations.
- All-in-One Solution
AutoCount combines inventory management, POS systems, and accounting, making it ideal for retailers, wholesalers, and SMEs. This integration ensures that businesses can manage their invoicing, inventory, and financial operations without duplicating data entries.
- Security
AutoCount prioritizes data security with features like digital certificates, protecting sensitive financial information.
- Offline Fallback
In case of connectivity issues, AutoCount allows for offline operations, ensuring businesses continue their invoicing without disruption.
- ERP Integration
AutoCount integrates smoothly with other enterprise resource planning (ERP) systems, further streamlining business processes and reducing manual errors.
Top E-Invoicing Solutions Compared
| SOFTWARE | BEST FOR | KEY FEATURES | COMPLIANCE | STARTING PRICE |
|---|---|---|---|---|
| AutoCount | Retailers, Wholesalers & SMEs (POS users) | All-in-one inventory & POS; Offline fallback | LHDN Ready | One-time (RM1,XXX+) |
| SQL Account | Services, Accountants, High-volume | Bulk processing; Perpetual license; Strong reporting | LHDN Ready | One-time (RM1,XXX+) |
| Bukku | Startups, Freelancers, Micro-SMEs | Cloud platform; Free e-invoice plan; Simple UI | Peppol / LHDN | Subscription (Freemium) |
| Chillhub | Service & Trading SMEs on budget | Affordable Cloud ERP; Integrated Job Management | LHDN Ready | From RM49/month |
| Xero | International Biz & Startups | Strong ecosystem; Multi-currency; Bank feeds | Partial/Peppol | ~USD 30/month |
| ClearTax | Dedicated Compliance Portal | Bulk upload (CSV); Error alerts; Reconciliation | API Integration | Custom Pricing |
If you’re curious about the differences between AutoCount 2.0 and AutoCount Cloud, read this detailed comparison guide to understand which version suits your business needs.
Other Noteworthy Solutions
- HashMicro
Ideal for growing SMEs needing customizable ERP solutions (Premium).
- Financio (by ABSS)
Cloud-based, designed for small businesses with local tax support.
- CCH iFirm
Tailored for accounting and audit firms to streamline billing.
How to Choose the Right Software
- Retail & F&B
Choose AutoCount. Its seamless integration of POS, inventory, and e-invoicing is ideal for multi-outlet operations.
- Service Firms & Accountants
SQL Account is powerful. Its robust bulk processing capabilities streamline operations for complex billing.
- Startups & Freelancers
Bukku offers the most straightforward path. Cloud-native and user-friendly for those with limited budget.
- SMEs needing Cloud ERP
Chillhub provides excellent value, combining accounting and job management starting from RM49/month.
Your Next Steps for Implementation
- Assess Your Timeline
Check the phased implementation schedule to confirm your compliance deadline based on revenue.
Conclusion: Turn Compliance into Opportunity
Adopting LHDN compliant e-invoicing software is more than a regulatory requirement—it’s a strategic move to modernize your finance operations. The right solution will prevent penalties, save time, and provide valuable insights.
To further enhance your business operations, consider exploring how AutoCount POS System seamlessly integrates with your invoicing processes, ensuring smoother transactions and compliance.
Disclaimer
The information provided in this article is for general guidance only and does not constitute professional advice. While every effort has been made to ensure the accuracy of the content, the laws and regulations regarding e-invoicing in Malaysia, particularly from LHDN, may change, and individual business circumstances may vary. We recommend that businesses consult with a qualified professional or directly contact the Inland Revenue Board of Malaysia (IRBM) for tailored advice on e-invoicing compliance and related matters. We disclaim any liability for any errors, omissions, or actions taken based on this content.
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Browse and compare the top e-invoicing software in Malaysia to automate your invoicing processes, ensure compliance, and streamline your business operations.
